- RAP-DB: Rice Annotation Project Database
- TENOR: Transcriptome ENcyclopedia Of Rice
- VigGS: Vigna Genome Server
- TASUKE: multiple genome browser
- Megante: Integrated Plant Genome Annotation
- Galaxy: NGS analysis pipeline
- AgrID: Agrigenomics Information Database
- ASV: Assembling Space Volume calculator
- 3dMET: Database for three-dimensional structures of natural metabolites