- RAP-DB: Rice Annotation Project Database
- RiceXPro: Rice Gene Expression Profiling Database
- RiceFREND: Rice Functionally Related Gene Network Database
- FiT-DB: Field Transcriptome Database
- Tos17: Rice Tos17 Insertion Mutant Panel Database
- SALAD: Genome-wide database of similarity clustering based on distribution patterns of motifs
- DAIZUbase: Soybean genome database
- PLACE: A Database of Plant Cis-acting Regulatory DNA Elements
