- RAP-DB: Rice Annotation Project Database
- RiceXPro: Rice Gene Expression Profiling Database
- RiceFREND: Rice Functionally Related Gene Network Database
- FiT-DB: Field Transcriptome Database
- KOME: Rice Full-length cDNA Database
- Tos17: Rice Tos17 Insertion Mutant Panel Database
- RiceGAAS: Rice Genome Automated Annotation System
- RiceTOGO Browser: Integrated rice genomics database
- RMG Information: Rice Mitochondrial Genome Database
- Rice Proteome DB: Rice Proteome Database
- RMOS: Rice Microarray Opening Site
- SALAD: Genome-wide database of similarity clustering based on distribution patterns of motifs
- Barley Gene Expression DB: Full-length cDNA sequences from malting barley
- DAIZUbase: Soybean genome database
- PLACE: A Database of Plant Cis-acting Regulatory DNA Elements
- Flowering Plant Gene Picker: Annotation pipeline for flowering plant genomes
- Soybean Proteome Database
