Top
ROOTomics laboratory members
Development of root
phenotyping platform
ROOTomics data collection &
database construction
Modeling of ideal root systems
based on ROOTomics
Model validation under natural
field conditions and the
identification of key genes
Yusaku Uga
Yusaku Uga
Yumiko Arai
Yumiko Arai
Takeshi Hayashi
Takeshi Hayashi
Tsuyoshi Tanaka
Tsuyoshi Tanaka
Kenji Irie
Kenji Irie
Yuko Numajiri
Yuko Numajiri
Noriyuki Kuya
Noriyuki Kuya
Saki Yoshida
Saki Yoshida
Takanari Tanabata
Takanari Tanabata
Naoki Kawachi
Naoki Kawachi
Yousuke Kawahito
Yousuke Kawahito
Shota Teramoto
Shota Teramoto
Yuta Miyoshi
Yuta Miyoshi
Mika Tei
Mika Tei
Taiji Kawakatsu
Taiji Kawakatsu
Shiori Yabe
Shiori Yabe
Kanami Yoshino
Kanami Yoshino
UGA Group

The UGA Group's mission is to clarify how crop root systems respond to stresses, such as drought, high temperature and low nitrogen, based on modeling using multi-omics data. We will obtain and analyze large amounts of imaging data of plant root systems grown in high-tech pots that can control the soil environment, including water content and temperature. Our other mission is to validate models of ideal RSAs constructed based on ROOTomics data under natural field conditions that include stress exposure. To determine "ideal RSAs" that can withstand environmental stresses, we will attempt to visualize and digitize root movements that are hidden under the ground.

Yusaku UGA
(Leader, Institute of Crop Science, NARO)

Specialized fields: Plant genetics and breeding, Root phenotyping

Yumiko ARAI
(Principal Scientist, Institute of Crop Science, NARO)

Specialized fields: Rice Physiology

Takeshi HAYASHI
(Staff, Research Center for Agricultural Information Technology, NARO)

Specialized fields: Statistical genetics

Tsuyoshi TANAKA
(Principal Scientist, Advanced Analysis Center, NARO)

Specialized fields: Database construction and management, Bioinformatics

Kenji IRIE
(Professor, Tokyo University of Agriculture)

Specialized fields: Crop Science, Plant Genetic Resources

Yuko NUMAJIRI
(Postdoctoral Fellow, Institute of Crop Science, NARO)

Specialized fields: Statistics

Noriyuki KUYA
(Postdoctoral Fellow, Institute of Crop Science, NARO)

Specialized fields: Plant genetics, Plant physiology

Saki YOSHIDA
(Assistant Professor, Tokyo University of Agriculture)

Specialized fields: Plant genetic resource

TANABATA Group
High-tech plant pot system
Root phenotyping software

The TANABATA Group's mission is to develop phenotyping technologies for ROOTomics data. This includes: high-tech pots that can control the soil environment and high-throughput root phenotyping software from X-ray CT images. Our other mission is to develop a platform for effectively processing large amounts of 'omics' data collected in the ROOTomics project.

Takanari TANABATA
(Researcher, Laboratory of Plant Genetics and Genomics, KDRI)

Specialized fields: Software development, Image analysis and computer vision, Plant Phenotyping

Naoki KAWACHI
(Senior Principal Researcher, Department of Radiation-Applied Biology, QST)

Specialized fields: RI Imaging, Kinetic Analysis, Development of Imaging Modalities

Yousuke KAWAHITO
(Director, Super-cutting-edge Grand and Advanced Research Program, JAMSTEC)

Specialized fields: High-power Lasers

Shota TERAMOTO
(Researcher, Institute of Crop Science, NARO)

Specialized fields: Plant Genomics, Physiology, Nutrition

Yuta MIYOSHI
(Researcher, Department of Radiation-Applied Biology, QST)

Specialized fields: Agricultural environmental and information engineering, Agricultural Meteorology

Mika TEI
(Postdoctoral Fellow, Super-cutting-edge Grand and Advanced Research Program, JAMSTEC)

Specialized fields: Synthetic Biology

KAWAKATSU Group

The KAWAKATSU group studies systemic responses to stresses perceived by underground roots. By monitoring transcriptome dynamics, we are working to develop biomarkers for these stress responses. We are also working to identify genes associated with stress-resilient crops to understand the underlying mechanisms. This information will greatly improve the modeling of "ideal RSAs", leading to the development of climate-resilient crops.

Taiji KAWAKATSU
(Principal Scientist, Institute of Agrobiological Sciences, NARO)

Specialized fields: Functional (epi)genomics for crop breeding

Shiori YABE
(Senior Scientist, Institute of Crop Science, NARO)

Specialized fields: Biometrics, Genetics

Kanami YOSHINO
(Postdoctoral Fellow, Institute of Agrobiological Sciences, NARO)

Specialized fields: molecular phylogenetics, transcriptomics